CITAM has a well-defined governance structure that has promoted sound stewardship and accountability with separation of financial management from pastoral ministry.

In accordance with the Constitution of CITAM, the church governance structure has three levels:

• The General Meeting is the supreme governing organ of the Church
• The Deacon Board consisting of twelve members elected by the AGM provides oversight of the business affairs of the Ministry
• The Council of Elders consisting of not more than seven members is responsible for spiritual, disciplinary and doctrinal oversight of the Ministry

The Management of CITAM's affairs is carried out under the supervision of the Bishop who provides oversight to the Church Assemblies through the Senior Pastors and to the Ministry Operations and management of the Business Units through the Director of Operations.

Legal custody of CITAM's real property is entrusted to a Trust, with the Trustees being appointed by the General Meeting.